There's nothing wrong with your vision even if you are tired.
The reason menus aren't covered within the template is that the standard menu is the one you are seeing. It is meant to be fast and efficient to match the rest of the template.
If you want a dynamic menu or a horizontal dropdown menu, many use Joomla menu extensions which have their own instructions.
The documentation that comes with the template does cover general editing of the logo, and there are other posts here discussing it if you search.
I hope this helps.
Post edited by: Rapunzl, at: 2010/01/10 01:42