Go to edit my profile and see the tab "Test". Delimiters are "lowered" while the values for radio and checkbox are "raised".

tr.sectiontableentry0 td, tr.sectiontableentry1 td, tr.sectiontableentry2 td, td.sectiontableentry0, td.sectiontableentry1, td.sectiontableentry2 {
    padding: 6px 5px;
    text-align: left;
    vertical-align: middle;
}

Another strange thing - The space between values within a field is also unusually small. E.g. In field "Test Checkbox", the value "Colours" is touching the box for the next value "Numbers".

.cbSnglCtrlLbl label {
	margin-right: 3px;
}

Btw, the gantry always updates itself so does that mean that when even I change it, it will revert to the same problem after a new gantry update again?

However the one to libraries/gantry/css/joomla.css for the vertical alignment issue merely adjust the entire contents within the text box vertically. But the alignment between the values and checkboxes did not change at all.

tr.sectiontableentry0 td, tr.sectiontableentry1 td, tr.sectiontableentry2 td, td.sectiontableentry0, td.sectiontableentry1, td.sectiontableentry2 {
    padding: 6px 5px;
    text-align: left;
    vertical-align: middle;
}